import os
import mysql.connector


TABLE_NAME = 'crispr_papers_info'
input('你确定TABLE_NAME是{}吗？'.format(TABLE_NAME))

# phosphorus_synthesis
excels_dir = os.path.join(os.path.dirname(__file__), 'CRISPR/CRISPR_engineered')
if_file_path = os.path.join(os.path.dirname(__file__), 'CRISPR/2023JCR.xlsx')
input('你确定导入文件夹是{}吗？'.format(excels_dir))

# MySQL connection setup
connection = mysql.connector.connect(
    host='100.84.94.73',
    user='metadata_mat_papers',
    password='siat-mic',
    database='metadata_mat_papers'
)
cursor = connection.cursor()


# Function to check if a table exists
def check_table_exists(table_name):
    cursor.execute(f"""
    SELECT COUNT(*)
    FROM information_schema.tables
    WHERE table_schema = DATABASE()
    AND table_name = '{table_name}'
    """)
    return cursor.fetchone()[0] == 1


# Function to create the table if it doesn't exist
def create_table(table_name):
    if not check_table_exists(table_name):
        query = f"""
        CREATE TABLE IF NOT EXISTS `{table_name}` (
            doi VARCHAR(255) PRIMARY KEY,
            unique_id VARCHAR(255),
            author TEXT,
            title TEXT,
            journal VARCHAR(255),
            year INT,
            volume VARCHAR(50),
            number VARCHAR(50),
            pages VARCHAR(50),
            month VARCHAR(50),
            issn VARCHAR(50),
            eissn VARCHAR(50),
            researcher_id TEXT,
            if2023 VARCHAR(50),
            if5 VARCHAR(50),
            journal_index VARCHAR(50),
            jcr_quartile VARCHAR(50),
            orcid TEXT,
            early_access_date VARCHAR(50),
            scihub_downlowded VARCHAR(50),
            convert2md VARCHAR(50),
            pdf_url TEXT,
            md_url TEXT,
            abstract TEXT,
            image_url JSON,
            en_text_content LONGTEXT,
            cited_reference_count INT,
            doi_link TEXT,
            research_areas TEXT,
            unique_wos_id VARCHAR(255)
        );
        """
        cursor.execute(query)


def record_exists(doi, table_name):
    query = f"SELECT COUNT(*) FROM `{table_name}` WHERE doi = %s"
    cursor.execute(query, (doi,))
    count = cursor.fetchone()[0]
    return count > 0


# Function to insert a record into the MySQL database
def insert_record(entry, table_name):
    # 定义列名列表
    columns = [
        'doi', 'unique_id', 'author', 'title', 'journal', 'year', 'volume',
        'number', 'pages', 'month', 'issn', 'eissn', 'researcher_id', 'if2023', 'if5', 'journal_index', 'jcr_quartile',
        'orcid', 'early_access_date', 'scihub_downlowded', 'convert2md', 'pdf_url', 'md_url', 'abstract', 'image_url',
        'text_content', 'cited_reference_count', 'doi_link', 'research_areas', 'unique_wos_id'
    ]

    # 构建SQL查询语句
    placeholders = ', '.join(['%s'] * len(columns))
    query = f"""
    INSERT INTO `{table_name}` ({', '.join(columns)})
    VALUES ({placeholders})
    """

    values = (
        entry.get('doi'),
        entry.get('unique-id'),
        entry.get('author'),
        entry.get('title'),
        entry.get('journal'),
        entry.get('year'),
        entry.get('volume'),
        entry.get('number', None),
        entry.get('pages', None),
        entry.get('month', None),
        entry.get('issn', None),
        entry.get('eissn', None),
        entry.get('researcherid-numbers', None),
        entry.get('if2023', None),
        entry.get('if5', None),
        entry.get('journal_index', None),
        entry.get('jcr_quartile', None),
        entry.get('ocrid-numbers', None),
        entry.get('earlyaccessdate', None),
        entry.get('scihub_downlowded', None),
        entry.get('convert2md', None),
        entry.get('pdf_url', None),
        entry.get('md_url', None),
        entry.get('abstract', None),
        entry.get('image_url', None),
        entry.get('text_content', None),
        entry.get('cited_reference_count', None),
        entry.get('doi_link', None),
        entry.get('research_areas', None),
        entry.get('unique_wos_id', None)
    )
    cursor.execute(query, values)


# 用pandas打开excel文件
import pandas as pd

df = pd.read_excel(if_file_path)
# 替换所有的nan为None
df = df.replace({pd.NA: None})

# Create the table if it doesn't exist
create_table(TABLE_NAME)

excels_file_list = []
for file in os.listdir(excels_dir):  # os.listdir('溶剂热文献-230505-swx-V3')
    if file.endswith('.xls'):
        excels_file_list.append(os.path.splitext(file)[0])


for excels_file in excels_file_list:
    print(os.path.join(excels_dir, excels_file + '.xls'))

    # 指定Excel文件路径
    file_path = os.path.join(excels_dir, excels_file + '.xls')

    # 读取Excel文件
    excel_df = pd.read_excel(file_path)
    # 替换所有的nan为None
    excel_df = excel_df.replace({pd.NA: None})

    # 显示DataFrame的前几行
    # print(df.head(5))
    for i in range(len(excel_df)):
        entry = dict()
        entry['doi'] = str(excel_df.loc[i, 'DOI'])
        entry['title'] = str(excel_df.loc[i, 'Article Title'])
        entry['journal'] = str(excel_df.loc[i, 'Source Title'])
        entry['abstract'] = str(excel_df.loc[i, 'Abstract'])
        entry['cited_reference_count'] = int(excel_df.loc[i, 'Cited Reference Count'])
        entry['year'] = int(excel_df.loc[i, 'Publication Year'])
        entry['doi_link'] = str(excel_df.loc[i, 'DOI Link'])
        entry['research_areas'] = str(excel_df.loc[i, 'Research Areas'])
        entry['unique_wos_id'] = str(excel_df.loc[i, 'UT (Unique WOS ID)'])

        journal = entry.get('journal')
        if journal is not None:
            journal_lower = journal.lower()  # 将期刊名称转为小写以进行不区分大小写的匹配
            matching_journal = df[df['JournalName'].str.lower() == journal_lower]  # 在DataFrame中查找该期刊
            if not matching_journal.empty:
                entry['if2023'] = matching_journal['IF2023'].values[0]
                entry['if5'] = matching_journal['IF5'].values[0]
                entry['journal_index'] = matching_journal['INDEX'].values[0]
                entry['jcr_quartile'] = matching_journal['Quartile'].values[0]

        doi = entry.get('doi')
        # 先检查记录是否存在，同时doi不能为空
        if not record_exists(doi, TABLE_NAME) and doi is not None:
            insert_record(entry, TABLE_NAME)

# Commit the changes and close the connection
connection.commit()
cursor.close()
connection.close()
print("Data has been inserted into the database!")